Draw Annotations¶

draw annotations like stimulation points, samplings point or synapses.

simple.swc

Draw marks¶

import swc2vtk
vtkgen = swc2vtk.VtkGenerator()
vtkgen.add_swc('simple.swc')
vtkgen.add_mark((1.0, 1.0, 1.0), size=0.5)
vtkgen.write_vtk('simple.vtk')
vtkgen.write_annotation_vtk('simple_mark.vtk')

Draw SWC compartment marks¶

import swc2vtk
vtkgen = swc2vtk.VtkGenerator()
vtkgen.add_swc('simple.swc')
vtkgen.add_swc_mark(0, 2, size=0.5)
vtkgen.write_vtk('simple.vtk')
vtkgen.write_annotation_vtk('simple_swc_mark.vtk')

Draw Synapses¶

import swc2vtk
vtkgen = swc2vtk.VtkGenerator()
vtkgen.add_swc('simple.swc')
vtkgen.add_swc('simple.swc', shift_y=30)
vtkgen.add_swc_connection(0, 2, 1, 1, size=0.5, data=2)
vtkgen.write_vtk('simple.vtk')
vtkgen.write_annotation_vtk('simple_connection.vtk')